Cambridge IGCSE0610

Enzymes

Biology 0610 Chapter Notes

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Enzymes
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1. What Are Enzymes?

Enzymes are essential proteins that act as biological catalysts. A catalyst is a substance that speeds up a chemical reaction without being used up in the process. Every living cell contains thousands of enzymes, each controlling a specific reaction. The sum of all these reactions is called metabolism. Enzymes can be involved in anabolic reactions (building larger molecules from smaller ones, e.g., building starch from glucose) or catabolic reactions (breaking down large molecules into smaller ones, e.g., digesting protein into amino acids). Without enzymes, these reactions would occur too slowly to sustain life.

Key term

Biological Catalyst: A protein-based substance made by living organisms that increases the rate of a specific biochemical reaction without being changed or consumed by the reaction.

Examiner insight

Examiners expect you to know that enzymes are proteins and that they function as biological catalysts. Using these specific terms in your answers will gain marks.

Worked example 14 marks

Copy and complete the following paragraph about enzymes.

Enzymes are ____ which speed up the biochemical ____ in living organisms. The enzymes themselves are not changed in these reactions, that is they are biological ____. Enzymes are ____ – each one controls only one type of reaction.

  1. 1

    Step 1: Identify the first blank. Enzymes are a type of molecule. Based on the definition, they are proteins.

  2. 2

    Answer 1: proteins

  3. 3

    Step 2: Identify the second blank. Enzymes speed up chemical processes in living things. The general term for this is reactions.

  4. 4

    Answer 2: reactions

  5. 5

    Step 3: Identify the third blank. The paragraph states they speed up reactions without being changed. This is the definition of a catalyst.

  6. 6

    Answer 3: catalysts

  7. 7

    Step 4: Identify the fourth blank. The clue is 'each one controls only one type of reaction'. This property is called specificity.

  8. 8

    Answer 4: specific

Recap

  • Enzymes are proteins that function as biological catalysts.
  • They speed up metabolic reactions in living organisms.
  • Enzymes are not used up during the reactions they catalyse.
  • Catabolic reactions break down molecules, while anabolic reactions build them up.
  • Each enzyme is highly specific to the reaction it controls.

Quick check

  1. What class of biological molecule are enzymes made from?1 mark
  2. What is the term for the sum of all chemical reactions in an organism?1 mark

2. How Enzymes Work: The Lock and Key Model

The action of an enzyme is explained by the 'lock and key' model. Each enzyme has a specific, three-dimensional shape which includes a small depression called the active site. The molecule the enzyme acts upon is called the substrate. The shape of the substrate is complementary to the shape of the active site, like a key fitting into a lock. The substrate binds to the active site, forming an enzyme-substrate complex. Inside the complex, the reaction is catalysed, and the substrate is converted into products. The products then detach from the active site, leaving the enzyme free to catalyse another reaction. This specificity is why amylase only digests starch and not protein.

Enzyme + Substrate → Enzyme-Substrate Complex → Enzyme + Product(s)

Key term

Active Site: The specific region of an enzyme with a complementary shape to its substrate, where the substrate binds and the catalytic reaction occurs.

Examiner insight

Clear, labelled diagrams illustrating the lock and key model are an excellent way to earn marks, especially when explaining enzyme specificity.

Common pitfall

A common mistake is stating that the substrate has the 'same shape' as the active site. The correct term is 'complementary shape', as they fit together.

Worked example 13 marks

The diagram shows the lock and key model for an enzyme that joins two small molecules together. Redraw the diagram to show the action of an enzyme catalysing a hydrolysis reaction (breaking down one large molecule into two smaller ones).

  1. 1

    Step 1: Draw the enzyme with its specific active site. This should look the same as the original enzyme.

  2. 2

    Step 2: Draw a single, large substrate molecule that has a shape complementary to the active site.

  3. 3

    Step 3: Show the substrate binding to the active site to form an enzyme-substrate complex.

  4. 4

    Step 4: Show the final stage where the enzyme is unchanged, but the large substrate has been broken down into two smaller product molecules, which are now leaving the active site.

Recap

  • The lock and key model explains enzyme specificity.
  • The substrate is the 'key' and the enzyme's active site is the 'lock'.
  • The shape of the substrate is complementary to the shape of the active site.
  • An enzyme-substrate complex is formed when the substrate binds.
  • The enzyme is unchanged after the reaction and can be reused.

Quick check

  1. What is the name of the molecule that an enzyme acts on?1 mark
  2. Why can an enzyme be used over and over again?1 mark

3. Factor Affecting Enzymes: Temperature

Temperature has a significant effect on the rate of enzyme-catalysed reactions. As temperature increases from a low level, the enzyme and substrate molecules gain more kinetic energy. This leads to more frequent collisions between the substrate and the active site, increasing the rate of reaction. This continues until the enzyme reaches its optimum temperature, which is the temperature at which it works most efficiently. For most human enzymes, this is around 37°C. If the temperature increases much beyond the optimum, the enzyme starts to denature. The high temperature breaks the weak bonds holding the enzyme in its specific 3D shape. The active site changes shape and is no longer complementary to the substrate. The substrate cannot bind, and the reaction stops. This change is irreversible.

Key term

Denaturation: The irreversible change in the specific three-dimensional shape of a protein, such as an enzyme, caused by extreme heat or pH, resulting in a loss of function.

Examiner insight

To get full marks for explaining denaturation, you must explicitly link the high temperature to the change in the shape of the active site and the subsequent inability of the substrate to bind.

Common pitfall

Students often say enzymes are 'killed' by heat. Enzymes are not alive, so the correct term is 'denatured'.

Worked example 14 marks

The graph shows the effect of temperature on the activity of a human enzyme.(a) What is the optimum temperature for this enzyme?(b) Explain what is happening to the enzyme at point X (e.g., 60°C).

  1. 1

    Part (a): Identify the peak of the graph. This represents the temperature at which the enzyme has the highest rate of activity.

  2. 2

    Solution (a): The optimum temperature is approximately 37°C.

  3. 3

    Part (b): Point X is at a high temperature, well past the optimum. The rate of reaction has dropped to zero.

  4. 4

    Solution (b): At 60°C, the enzyme is denatured. The high temperature has broken the bonds that maintain the enzyme's 3D shape. This causes the active site to change shape, so the substrate can no longer bind. The change is irreversible.

Recap

  • Increasing temperature increases kinetic energy and reaction rate, up to a point.
  • The optimum temperature is where the enzyme's activity is highest.
  • High temperatures cause irreversible denaturation.
  • Denaturation involves the active site changing shape.
  • Low temperatures inactivate enzymes but do not denature them.

Quick check

  1. What is the term for the temperature at which an enzyme works best?1 mark
  2. Why does the rate of reaction decrease at temperatures above the optimum?2 marks

4. Factor Affecting Enzymes: pH

Like temperature, pH also affects an enzyme's activity. Each enzyme has an optimum pH at which its rate of reaction is maximal. For example, pepsin, a protease in the stomach, works best at an acidic pH of around 2. In contrast, trypsin, which works in the small intestine, has an optimum pH of about 8. If the pH is too far from the optimum (either too acidic or too alkaline), the enzyme will denature. The pH affects the ionic bonds that help maintain the enzyme's specific 3D shape. A change in pH disrupts these bonds, causing the shape of the active site to change. The substrate can no longer fit, and the enzyme's activity decreases or stops completely. Unlike heat denaturation, slight pH changes can sometimes be reversed, but extreme pH changes cause irreversible denaturation.

Key term

Optimum pH: The specific pH value at which an enzyme exhibits its maximum rate of activity.

Examiner insight

When answering questions about pH, mentioning specific examples like pepsin (acidic) and trypsin (alkaline) demonstrates a deeper understanding and often attracts marks.

Common pitfall

Assuming that all enzymes have an optimum pH of 7. Many enzymes are adapted to work in very acidic or alkaline conditions within the body.

Worked example 14 marks

A student investigated the effect of pH on the breakdown of starch by amylase. They measured the time taken for the starch to disappear at different pH values. Their results are in the table.

pHTime to break down starch / s
4300
5180
665
760
862
9190

(a) What is the optimum pH for amylase according to these results?(b) Explain why the reaction is much slower at pH 4 than at pH 7.

  1. 1

    Part (a): The optimum pH is where the reaction is fastest. The fastest reaction is the one that takes the shortest time. The shortest time in the table is 60 seconds.

  2. 2

    Solution (a): The optimum pH is 7.

  3. 3

    Part (b): Compare the conditions. pH 4 is far from the optimum pH of 7. This acidic condition affects the enzyme's structure.

  4. 4

    Solution (b): At pH 4, the enzyme amylase is starting to denature. The acidic conditions alter the bonds in the enzyme, changing the shape of its active site. This means the starch substrate cannot bind efficiently, so the rate of reaction is very slow.

Recap

  • Every enzyme has an optimum pH at which it works best.
  • Extreme pH values (too high or too low) cause the enzyme to denature.
  • Denaturation by pH changes the shape of the active site.
  • Pepsin in the stomach has an optimum pH of ~2.
  • Trypsin in the small intestine has an optimum pH of ~8.

Quick check

  1. Name an enzyme that functions in a highly acidic environment.1 mark
  2. What happens to the bonds within an enzyme molecule at a pH far from its optimum?1 mark

5. Applications of Enzymes

Enzymes are not just vital in cells; humans have harnessed their power for various industrial and commercial purposes. In digestion, our bodies produce extracellular enzymes like amylase (breaks down starch to maltose), protease (breaks down protein to amino acids), and lipase (breaks down lipids to fatty acids and glycerol). Industrially, these same principles are used. Biological washing powders contain proteases and lipases to break down protein and fat stains (like blood and grease) at lower wash temperatures, saving energy. In food production, pectinase is used to break down pectin in fruit cell walls, which clarifies fruit juice and increases the yield. Lactase is used to break down lactose into glucose and galactose, creating lactose-free milk for intolerant individuals. Finally, in the production of cheese, the enzyme chymosin (rennet) is used to curdle milk.

Starch --(Amylase)--> Maltose

Protein --(Protease)--> Amino Acids

Lipids (Fats) --(Lipase)--> Fatty Acids + Glycerol

Key term

Extracellular Enzyme: An enzyme that is secreted by a cell and functions outside of that cell, such as digestive enzymes.

Fun fact

The 'stone-washed' look in denim jeans is created using cellulase enzymes, which digest some of the cellulose fibres in the cotton to soften the fabric and create a worn appearance.

Worked example 13 marks

Biological washing powders are effective at removing stains like blood and grease.(a) Name the two types of enzymes typically found in these powders.(b) Explain one advantage of using biological washing powders compared to non-biological powders.

  1. 1

    Part (a): Identify the biological molecules in the stains. Blood is mainly protein, and grease is a lipid (fat).

  2. 2

    Solution (a): Proteases (to break down protein) and lipases (to break down lipids).

  3. 3

    Part (b): Think about how enzymes work. They have an optimum temperature. Industrial enzymes are chosen to work at lower temperatures.

  4. 4

    Solution (b): One advantage is that they are effective at lower temperatures. This saves energy as less electricity is needed to heat the water for the wash, and it also reduces the risk of shrinking delicate clothes.

Worked example 23 marks

Explain why the enzyme pectinase is added during the production of apple juice.

  1. 1

    Step 1: Recall the function of pectinase. Pectin is a substance found in plant cell walls that makes them stick together.

  2. 2

    Step 2: Relate this to apple juice production. Crushed apples contain a lot of pectin, which can make the juice cloudy and traps juice within the pulp.

  3. 3

    Step 3: Describe the action of the enzyme. Pectinase breaks down the pectin.

  4. 4

    Step 4: State the benefits. Breaking down pectin releases more juice from the fruit pulp (increasing yield) and results in a clear, not cloudy, final product.

Recap

  • Proteases and lipases are used in washing powders to remove protein and fat stains.
  • Using enzymes in washing powders allows for lower wash temperatures, saving energy.
  • Pectinase is used to increase the yield and clarity of fruit juices.
  • Lactase is used to produce lactose-free milk.
  • Digestive enzymes like amylase, protease, and lipase are examples of extracellular enzymes.

Quick check

  1. Which enzyme would you use to make milk suitable for a lactose-intolerant person?1 mark
  2. Why would a washing powder containing protease not be effective at removing an oily stain?1 mark

6. Immobilised Enzymes

In industrial processes, it is often beneficial to use immobilised enzymes. This means the enzymes are attached to an insoluble material or trapped inside small beads or fibres. For example, enzymes can be encapsulated in a gel (like alginate beads). The substrate solution is then passed over these beads. The substrate molecules are small enough to diffuse into the beads and bind with the active sites of the enzymes. The products, also small, diffuse back out. This technique has several key advantages: 1) The enzyme is not mixed with the product, so no costly separation is needed, resulting in a purer product. 2) The enzyme can be easily reused for subsequent batches, which is cost-effective. 3) Immobilised enzymes are often more stable and resistant to changes in temperature and pH.

Key term

Immobilised Enzymes: Enzymes that are physically attached to an inert, insoluble material, allowing for their easy separation from products and reuse.

Examiner insight

Questions on immobilised enzymes often focus on the advantages. Being able to clearly state two distinct advantages, such as reusability and product purity, is a common requirement.

Worked example 12 marks

Lactase is an enzyme used to produce lactose-free milk. In the factory, the lactase is immobilised in beads, and milk is passed over them. State two reasons why it is an advantage to immobilise the lactase.

  1. 1

    Step 1: Recall the general advantages of immobilisation. Think about separation, reuse, and stability.

  2. 2

    Step 2: Apply the first advantage to this context. If the enzyme isn't immobilised, it will be mixed in with the milk.

  3. 3

    Solution - Advantage 1: The enzyme does not get mixed with the product (the milk), so no separation is required and the final product is pure.

  4. 4

    Step 3: Apply the second advantage. Enzymes are expensive.

  5. 5

    Solution - Advantage 2: The immobilised enzyme beads can be reused multiple times, which reduces the overall cost of the process.

Recap

  • Immobilised enzymes are attached to an insoluble material.
  • This allows enzymes to be easily separated from the products.
  • Immobilisation means the enzymes can be reused, reducing costs.
  • The products are not contaminated with the enzyme.
  • Immobilised enzymes can be more stable at different temperatures and pHs.

Quick check

  1. State one method of immobilising an enzyme.1 mark
  2. Why is it cheaper for a factory to use immobilised enzymes?1 mark

End-of-chapter exercise

Test yourself on the whole chapter. Work through these before moving on.

  1. Describe the lock and key hypothesis of enzyme action.4 marks
  2. A student investigated the effect of temperature on the activity of catalase, an enzyme that breaks down hydrogen peroxide into water and oxygen. Describe an experiment they could carry out. Your answer should include the variable to be measured and two variables to be controlled.5 marks
  3. Explain why a high fever (e.g., 40°C) can be dangerous, with reference to enzymes.3 marks
  4. The graph shows the activity of two different digestive enzymes, A and B, at a range of pH values. (a) Identify the optimum pH for enzyme A and enzyme B. (b) Suggest where in the human digestive system enzyme A and enzyme B might be found, giving a reason for your answer.4 marks
  5. What is meant by the term 'enzyme specificity'?2 marks
  6. Biological washing powders contain enzymes such as proteases. Explain how these enzymes help to remove stains like grass or blood.3 marks
  7. Explain three advantages of using immobilised enzymes in industrial processes.3 marks
  8. Draw a simple graph to show the effect of substrate concentration on the rate of an enzyme-catalysed reaction. Explain the shape of your graph.4 marks
  9. Amylase is an enzyme that digests starch. A student adds amylase to a starch solution in a test tube and tests samples from the tube every minute with iodine solution. Describe and explain the expected results.4 marks
  10. Distinguish between an intracellular and an extracellular enzyme, giving one named example of each.4 marks

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